Generates a summary of a Pmetrics NPAG or IT2B run
Arguments
- wd
The working directory containing the NP_RFxxxx.TXT or IT_RFxxxx.TXT file
- rdata
The processed output of an IT2B or NPAG run, depending on local or server runs.
- icen
Median (default), mean or mode of Bayesian posterior to be used to calculate predictions.
- type
“NPAG” (default) or “IT2B” report type
- parallel
Boolean parameter which indicates the type of run done. Default is
FALSEfor serial.
Value
Several files are placed in the wd
- NPAGreport.html or IT2Breport.html
An .html file containing a summary of all the results
- poppoints.csv
NPAG only: A .csv file containing the population support points and probabilities
- poparam.csv
A .csv file containing a summary of the population parameter values, including mean, standard deviation, coefficient of variation, variance, and median
- popcor.csv
A .csv file containing the population parameter correlation matrix
- popcov.csv
A .csv file containing the population parameter covariance matrix
- cycle.pdf
A .pdf file containing the run cycle information (see
plot.PMcycle)- cycle.png
A thumbnail of the run cycle information for the .html file
- final.pdf
A .pdf file containing the population final cycle information (see
plot.PMfinal)- final.png
A thumbnail of the population final cycle information for the .html file
- opx.pdf
One or more .pdf files, where x is the number of the output equation, each containing two observed vs. predicted plots: population and individual Bayesian posterior predictions (see
plot.PMop)- opx.png
One or more thumnails of the observed vs. predicted plots for the .html file
- NPAGout.Rdata or IT2Bout.Rdata
An R data file containing the output of
NPparseorITparse,makeFinal,makeCycle,makeOP,makeCov,makePop,makePost, and the data file for the run read byPMreadMatrix. This file can be loaded usingPMload.