DataRow

Struct DataRow 

pub struct DataRow {
Show 16 fields pub id: String, pub time: f64, pub evid: i32, pub dose: Option<f64>, pub dur: Option<f64>, pub addl: Option<i64>, pub ii: Option<f64>, pub input: Option<usize>, pub out: Option<f64>, pub outeq: Option<usize>, pub cens: Option<Censor>, pub c0: Option<f64>, pub c1: Option<f64>, pub c2: Option<f64>, pub c3: Option<f64>, pub covariates: HashMap<String, f64>,
}
Expand description

A format-agnostic representation of a single data row

This struct represents the canonical fields needed to create pharmsol Events. Consumers construct this from their source data (regardless of column names), then call into_events() to get properly parsed Events with full ADDL expansion, EVID handling, censoring, etc.

§Fields

All fields use Pmetrics conventions:

  • input and outeq are 1-indexed (kept as-is, user must size arrays accordingly)
  • evid: 0=observation, 1=dose, 4=reset/new occasion
  • addl: positive=forward in time, negative=backward in time

§Example

use pharmsol::data::parser::DataRow;

// Observation row
let obs = DataRow::builder("pt1", 1.0)
    .evid(0)
    .out(25.5)
    .outeq(1)
    .build();

// Dosing row with negative ADDL (doses before time 0)
let dose = DataRow::builder("pt1", 0.0)
    .evid(1)
    .dose(100.0)
    .input(1)
    .addl(-10)  // 10 doses BEFORE time 0
    .ii(12.0)
    .build();

let events = dose.into_events().unwrap();
// Events at times: -120, -108, -96, ..., -12, 0
assert_eq!(events.len(), 11);

Fields§

§id: String

Subject identifier (required)

§time: f64

Event time (required)

§evid: i32

Event type: 0=observation, 1=dose, 4=reset/new occasion

§dose: Option<f64>

Dose amount (for EVID=1)

§dur: Option<f64>

Infusion duration (if > 0, dose is infusion; otherwise bolus)

§addl: Option<i64>

Additional doses count (positive=forward, negative=backward in time)

§ii: Option<f64>

Interdose interval for ADDL

§input: Option<usize>

Input compartment

§out: Option<f64>

Observed value (for EVID=0)

§outeq: Option<usize>

Output equation number

§cens: Option<Censor>

Censoring indicator

§c0: Option<f64>

Error polynomial coefficients

§c1: Option<f64>

Error polynomial coefficients

§c2: Option<f64>

Error polynomial coefficients

§c3: Option<f64>

Error polynomial coefficients

§covariates: HashMap<String, f64>

Covariate values at this time point

Implementations§

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impl DataRow

pub fn builder(id: impl Into<String>, time: f64) -> DataRowBuilder

Create a new builder for constructing a DataRow

§Arguments
  • id - Subject identifier
  • time - Event time
§Example
use pharmsol::data::parser::DataRow;

let row = DataRow::builder("patient_001", 0.0)
    .evid(1)
    .dose(100.0)
    .input(1)
    .build();

pub fn into_events(self) -> Result<Vec<Event>, DataError>

Convert this row into pharmsol Events

This method contains all the complex parsing logic:

  • EVID interpretation (0=observation, 1=dose, 4=reset)
  • ADDL/II expansion (both positive and negative directions)
  • Infusion vs bolus detection based on DUR
  • Censoring and error polynomial handling
§ADDL Expansion

When addl and ii are both specified:

  • Positive ADDL: Additional doses are placed after the base time
    • Example: time=0, addl=3, ii=12 → doses at 12, 24, 36, then 0
  • Negative ADDL: Additional doses are placed before the base time
    • Example: time=0, addl=-3, ii=12 → doses at -36, -24, -12, then 0
§Returns

A vector of Events. A single row may produce multiple events when ADDL is used.

§Errors

Returns DataError if required fields are missing for the given EVID:

  • EVID=0: Requires outeq
  • EVID=1: Requires dose and input; if dur > 0, it’s an infusion
§Example
use pharmsol::data::parser::DataRow;

let row = DataRow::builder("pt1", 0.0)
    .evid(1)
    .dose(100.0)
    .input(1)
    .addl(2)
    .ii(24.0)
    .build();

let events = row.into_events().unwrap();
assert_eq!(events.len(), 3); // doses at 24, 48, and 0

let times: Vec<f64> = events.iter().map(|e| e.time()).collect();
assert_eq!(times, vec![24.0, 48.0, 0.0]);

pub fn covariates(&self) -> &HashMap<String, f64>

Get the covariate values for this row

Returns a reference to the HashMap of covariate name → value pairs.

pub fn is_occasion_reset(&self) -> bool

Check if this row represents a new occasion (EVID=4)

pub fn id(&self) -> &str

Get the subject ID

pub fn time(&self) -> f64

Get the event time

Trait Implementations§

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impl Clone for DataRow

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fn clone(&self) -> DataRow

Returns a duplicate of the value. Read more
1.0.0 · Source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl Debug for DataRow

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fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter. Read more
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impl Default for DataRow

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fn default() -> DataRow

Returns the “default value” for a type. Read more

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